PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00431.1.g00130.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 283aa    MW: 31346.2 Da    PI: 4.6534
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00431.1.g00130.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.3e-1970123356
                                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   k++++ ++q+ +Le++Fe + +++ e+++++A+ l+L  rqV vWFqNrRa++k
  Zpz_sc00431.1.g00130.1.am.mk  70 KKRRLAADQVSALERCFEADDKLDPERKARIARDLRLHPRQVAVWFQNRRARWK 123
                                   4557899**********************************************9 PP

2HD-ZIP_I/II124.45.3e-4069161193
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   ekkrrl+++qv++LE++Fe+++kL+perK+++ar+L+l+prqvavWFqnrRAR+ktkq+E+d++aL++++dal++e ++L+
  Zpz_sc00431.1.g00130.1.am.mk  69 EKKRRLAADQVSALERCFEADDKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFNALRSRHDALRHECDELR 149
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLreelke 93 
                                   +++++L++e++e
  Zpz_sc00431.1.g00130.1.am.mk 150 RDKDALAAEIRE 161
                                   *******99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.06665125IPR001356Homeobox domain
SuperFamilySSF466891.63E-1766127IPR009057Homeodomain-like
SMARTSM003891.7E-1868129IPR001356Homeobox domain
PfamPF000461.2E-1670123IPR001356Homeobox domain
CDDcd000866.90E-1670126No hitNo description
Gene3DG3DSA:1.10.10.602.4E-1876123IPR009057Homeodomain-like
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PfamPF021834.5E-14125166IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MKRPSCRGSS VASQGTQEQE SEDSSRYMER QGLDVHGTVD VVASADTYGD EEEDEDELEL  60
AGGRGGLGEK KRRLAADQVS ALERCFEADD KLDPERKARI ARDLRLHPRQ VAVWFQNRRA  120
RWKTKQIERD FNALRSRHDA LRHECDELRR DKDALAAEIR ELREKVEKQM AVKLESMEDR  180
PLQAVTTVYK DGSTDSDSSA VFNEEASPYS GGAAFDHHPS FNGFTSFLAS SSALGSFPSM  240
YSGGPHLDQP EADGFLGAVA TTDGFFAEEQ GTGLGGWYGG DGW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117125RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0997531e-109FP099753.1 Phyllostachys edulis cDNA clone: bphyem212a11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983072.11e-110PREDICTED: homeobox-leucine zipper protein HOX8-like isoform X1
RefseqXP_012704164.11e-110PREDICTED: homeobox-leucine zipper protein HOX8-like isoform X1
SwissprotQ338Z71e-87HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8
TrEMBLA0A0A9JEK41e-123A0A0A9JEK4_ARUDO; Uncharacterized protein
STRINGSi040014m1e-110(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42833170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.11e-37homeobox protein 16